конфликты при установке file /etc/alterator/profile.d/install2 conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3 file /usr/lib/alterator/backend3/savesettings conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3 file /usr/sbin/install2 conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3 file /usr/sbin/install2-init conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3 file /usr/sbin/install2-rpm conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3 file /usr/sbin/socket-write conflicts between attempted installs of alterator-install2-server-0.9-alt1 and alterator-install2-desktop-0.9-alt3
installer-desktop и installer-server тоже конфликтуют по файлам - это нормальная ситуация. Пакеты формально не знают о существовании друг друга.